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Software on Snellius and Lisa

Toolchains

Software	Version
foss	2021a
gompi	2021a
iimpi	2021a
intel	2021a

Compilers

Software	Version
AOCC	3.0.0
GCC	10.3.0
GCCcore	10.3.0
LLVM	12.0.1
NVHPC	21.5
intel-compilers	2021.2.0

MPI

Software	Version
MPICH	3.4.2
OpenMPI	4.1.1
impi	2021.2.0

Languages

Software	Version
Anaconda3	2021.05
Bison	3.7.6
FriBidi	1.0.10
Guile	2.2.7
Java	1.8.0_292
Julia	1.6.1
Lua	5.4.3
Miniconda3	4.9.2
NASM	2.15.05
Perl	5.32.1
Python	2.7.18
R	4.1.0
RStudio-Server	1.4.1717
Rust	1.52.1
SOCI	4.0.2
SciPy-bundle	2021.05
Tcl	8.6.11
Tkinter	3.9.5
Yasm	1.3.0
flex	2.6.4
nodejs	14.17.0

Data analysis

Software	Version
CDO	1.9.10
Fiona	1.8.20
GDAL	3.3.0
HDF	4.2.15
HDF5	1.10.7
LAME	3.100
NCL	6.6.2
PnetCDF	1.12.2
PostgreSQL	13.3
XML-Parser	2.46
g2clib	1.6.3
g2lib	3.2.0
h5py	3.2.1
netCDF	4.8.0
netCDF-C++4	4.3.1
netCDF-Fortran	4.5.3
pyproj	3.1.0

Visualization

Software	Version
ATK	2.36.0
Blender	2.93.1
FFmpeg	4.3.2
FLTK	1.3.6
GLib	2.68.2
GST-plugins-base	1.18.4
GStreamer	1.18.4
GTK+	2.24.33
GTK3	3.24.29
GTS	0.7.6
Gdk-Pixbuf	2.42.6
Graphviz	2.47.2
HarfBuzz	2.8.1
ImageMagick	7.0.11
JasPer	2.0.28
LittleCMS	2.12
Mesa	21.1.1
Pango	1.48.5
ParaView	5.9.1
Pillow	8.2.0
Tk	8.6.11
VTK	9.0.1
X11	20210518
Xvfb	1.20.11
at-spi2-atk	2.38.0
at-spi2-core	2.40.2
cairo	1.16.0
fontconfig	2.13.93
freetype	2.10.4
gnuplot	5.4.2
jbigkit	2.1
libGLU	9.0.1
matplotlib	3.4.2
pixman	0.40.0
wxWidgets	3.1.5
x264	20210414
x265	3.5
xprop	1.2.5

Computer Aided Engineering

Software	Version
ANSYS	2021R2
Lumerical	2021
OpenFOAM	v2106

Math

Software	Version
ELPA	2021.05.001
Eigen	3.3.9
GEOS	3.9.1
GMP	6.2.1
MATLAB	R2021a
MCR	R2021a.3
METIS	5.1.0
MPC	1.2.1
MPFR	4.1.0
MUMPS	5.4.0
Qhull	2020.2
SCOTCH	6.1.0
Shapely	1.8a1
gmpy2	2.1.0b5
libcerf	1.17
sympy	1.8

Physics

Software	Version
COMSOL	5.6.0.341
Crystal17	1.0.2
Elk	7.2.42
UDUNITS	2.2.28
VASP5	5.4.4.pl2
VASP6	6.2.1

Chemistry

Software	Version
AMS	2021.101
Gaussian	g16.c01
Libint	2.6.0
NAMD	2.14
NWChem	7.0.2
ORCA	5.0.0
OpenMolcas	21.06
PLUMED	2.7.2
QuantumESPRESSO	6.7
TURBOMOLE	7.5
Wannier90	3.1.0
libxc	5.1.5

Numerical Libraries

Software	Version
BLIS	0.8.1
CGAL	4.14.3
FFTW	3.3.9
GSL	2.7
Hypre	2.21.0
NLopt	2.7.0
OpenBLAS	0.3.15
PETSc	3.15.1
ScaLAPACK	2.1.0
SuiteSparse	5.10.1
cuDNN	8.2.1.32
imkl	2021.2.0

Geography

Software	Version
Cartopy	0.20.0
ESMF	8.1.1
WRF	4.3

Biology

Software	Version
BCFtools	1.12
BEDTools	2.30.0
BamTools	2.5.2
BioRunner	2021
Bowtie2	2.4.4
FreeSurfer	7.1.1
GROMACS	2021.3
Gctf	1.06
HTSlib	1.12
MotionCor2	1.4.4
NBO	6.0
PLINK	2.00a2.3_x86_64
PRSice	2.3.3
QIIME2	2021.8
RELION	3.1.2
ResMap	1.1.4
SAMtools	1.12
STAR	2.7.9a
VCFtools	0.1.16
ctffind	4.1.14
summovie	1.0.2
unblur	1.0.2

Performance analysis tools

Software	Version
CubeGUI	4.6
CubeLib	4.6
CubeWriter	4.6
OPARI2	2.0.6
OTF2	2.3
PAPI	6.0.0.1
PDT	3.25.1
Paraver	4.9.2
Score-P	7.0

Tools

Software	Version
ANTLR	2.7.7
DB	18.1.40
GLPK	5.0
Ghostscript	9.54.0
HPL	2.3
Horovod	0.22.1
IPython	7.25.0
IRkernel	1.2
JupyterHub	1.4.1
Meson	0.58.0
NCO	5.0.1
Ninja	1.10.2
Szip	2.1.1
UnZip	6.0
XZ	5.2.5
YAXT	0.9.1
Zip	3.0
binutils	2.34
bzip2	1.0.8
cURL	7.76.0
configurable-http-proxy	4.4.0
cppy	1.1.0
ecCodes	2.22.1
expat	2.2.9
gettext	0.21
git	2.32.0
gperftools	2.9.1
groff	1.22.4
gzip	1.10
help2man	1.48.3
hypothesis	6.13.1
iRODS-iCommands	4.3.0
jupyter-server-proxy	3.1.0
jupyterlmod	2.0.2
libarchive	3.5.1
likwid	5.2.0
networkx	2.5.1
numactl	2.0.14
p7zip	17.04
parallel	20210622
patchelf	0.12
re2c	2.1.1
tcsh	6.22.04
time	1.9
util-linux	2.36

Libraries

Software	Version
FLAC	1.3.3
FlexiBLAS	3.0.4
GDRCopy	2.2
GlobalArrays	5.8
ICU	69.1
JsonCpp	1.9.4
LMDB	0.9.28
LibTIFF	4.2.0
NCCL	2.10.3
NSPR	4.30
NSS	3.65
PMIx	3.2.3
PROJ	8.0.1
PyYAML	5.4.1
SDL2	2.0.14
SIONlib	1.7.6
TensorFlow	2.6.0
UCX	1.10.0
UCX-CUDA	1.10.0
double-conversion	3.1.5
gc	8.0.4
giflib	5.2.1
libdap	3.20.7
libdrm	2.4.106
libepoxy	1.5.8
libevent	2.1.12
libfabric	1.12.1
libffi	3.3
libgd	2.3.1
libgeotiff	1.6.0
libglvnd	1.3.3
libiconv	1.16
libjpeg-turbo	2.0.6
libogg	1.3.4
libpng	1.6.37
libreadline	8.1
libsndfile	1.0.31
libsodium	1.0.18
libtirpc	1.3.2
libtool	2.4.6
libunistring	0.9.10
libunwind	1.4.0
libvorbis	1.3.7
libxml2	2.9.10
libxslt	1.1.34
libyaml	0.2.5
lxml	4.6.3
lz4	1.9.3
nettle	3.7.2
pybind11	2.6.2
scikit-build	0.11.1
snappy	1.1.8
tbb	2021.2.0
zlib	1.2.11
zstd	1.4.9

Development

Software	Version
Autoconf	2.71
Automake	1.16.3
Autotools	20210128
Bazel	3.7.2
Boost	1.76.0
CMake	3.20.1
DBus	1.13.18
Doxygen	1.9.1
GObject-Introspection	1.68.0
M4	1.4.18
Mako	1.1.4
PCRE	8.44
PCRE2	10.36
Qt5	5.15.2
ReFrame	3.5.2
SQLite	3.35.4
SWIG	4.0.2
ZeroMQ	4.3.4
ant	1.10.11
flatbuffers	2.0.0
flatbuffers-python	2.0
gperf	3.1
intltool	0.51.0
libgit2	1.1.0
makedepend	1.0.6
makeinfo	6.7
ncurses	6.2
nsync	1.24.0
pkg-config	0.29.2
pkgconfig	1.5.4
protobuf	3.17.3
protobuf-python	3.17.3
typing-extensions	3.10.0.0
xorg-macros	1.19.3
xproto	7.0.31

Debuggers

Software	Version
TotalView	2021.2.14_linux_x86
Valgrind	3.17.0

System

Software	Version
CUDA	11.3.1
CUDAcore	11.3.1
OpenPGM	5.2.122
OpenSSL	1.1
TestCow	0.0.0
hwloc	2.4.1
libpciaccess	0.16
supporting-utils	0.0.0

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